From geochemical cycles to human health, the microbiome play key roles in their ecosystems. Sampling directly from the environment the DNA information contained in their genome - coined as metagenomics - allows to study the composition, diversity and functions of the organisms in microbiomes.

I am interested in developing data science methods to unveil information from microbiomes through the lens of DNA information. More specifically, I am currently working on the following topics:

General interests

Bioinformatics:

  • Abundance sequences classification
  • Metagenomics and viral metagenomics
  • Metagenome-wide association studies
  • Protein structure classification

Computer science:

  • Supervised and unsupervised classification

Projects

  • (Viral) metagenomics sequence annotations
  • Binning
  • Human gut MWAS
  • Gene calling for metagenomics
  • High throughput remote homology detection

Publications

See my Scholar page.